Aladjem, Mirit I.: search on Z-Library

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1

The Systems Biology Graphical Notation

Novère, Nicolas Le, Hucka, Michael, Mi, Huaiyu, Moodie, Stuart, Schreiber, Falk, Sorokin, Anatoly, Demir, Emek, Wegner, Katja, Aladjem, Mirit I, Wimalaratne, Sarala M

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 1.03 MB

english, 2009

2

LibSBGN: Electronic Processing of SBGN maps

Demir, Emek, Dogrusoz, Ugur, Le Novère, Nicolas, Matsuoka, Yukiko, Sorokin, Anatoly, Funahashi, Akira, Mi, Huaiyu, Kitano, Hiroaki, Aladjem, Mirit, van Iersel, Martijn, Blinov, Michael, Boyd, Sarah, V

Journal:

Bioentrepreneur

Year:

2010

File:

PDF, 1.38 MB

2010

3

The replicon revisited: an old model learns new tricks in metazoan chromosomes

Aladjem, Mirit I., Fanning, Ellen

Journal:

Year:

2004

Language:

english

File:

PDF, 73 KB

english, 2004

4

Methylation of Histone H3 on Lysine 79 Associates with a Group of Replication Origins and Helps Limit DNA Replication Once per Cell Cycle

Fu, Haiqing, Maunakea, Alika K., Martin, Melvenia M., Huang, Liang, Zhang, Ya, Ryan, Michael, Kim, RyangGuk, Lin, Chii Meil, Zhao, Keji, Aladjem, Mirit I., Pearson, Christopher E.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.47 MB

english, 2013

5

Erratum: The Systems Biology Graphical Notation

Le Novère, Nicolas, Hucka, Michael, Mi, Huaiyu, Moodie, Stuart, Schreiber, Falk, Sorokin, Anatoly, Demir, Emek, Wegner, Katja, Aladjem, Mirit I, Wimalaratne, Sarala M

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 65 KB

english, 2009

6

Mapping Replication Fork Direction by Leading Strand Analysis

Mirit I. Aladjem, Geoffrey M. Wahl

Journal:

Year:

1997

Language:

english

File:

PDF, 513 KB

english, 1997

7

Chromatin Structure and Replication Origins: Determinants of Chromosome Replication and Nuclear Organization

Smith, Owen K., Aladjem, Mirit I.

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 741 KB

english, 2014

8

DNA Methylation Supports Intrinsic Epigenetic Memory in Mammalian Cells

Feng, Yong-Qing, Desprat, Romain, Fu, Haiqing, Olivier, Emmanuel, Lin, Chii Mei, Lobell, Amanda, Gowda, Shilpa N., Aladjem, Mirit I., Bouhassira, Eric E.

Journal:

Year:

2006

Language:

english

File:

PDF, 466 KB

english, 2006

9

Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response

Luna, Augustin, McFadden, Geoffrey B., Aladjem, Mirit I., Kohn, Kurt W., Kim, Jae Kyoung

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.56 MB

english, 2015

10

Depicting combinatorial complexity with the molecular interaction map notation

Kohn, Kurt W, Aladjem, Mirit I, Kim, Sohyoung, Weinstein, John N, Pommier, Yves

Journal:

Molecular Systems Biology

Year:

2006

Language:

english

File:

PDF, 327 KB

english, 2006

11

CellMinerCDB for Integrative Cross-Database Genomics and Pharmacogenomics Analyses of Cancer Cell Lines

Rajapakse, Vinodh N., Luna, Augustin, Yamade, Mihoko, Loman, Lisa, Varma, Sudhir, Sunshine, Margot, Iorio, Francesco, Sousa, Fabricio G., Elloumi, Fathi, Aladjem, Mirit I., Thomas, Anish, Sander, Chri

Journal:

Year:

2018

Language:

english

File:

PDF, 12.32 MB

english, 2018

12

Dynamic Alterations of Replication Timing in Mammalian Cells

Chii Mei Lin, Haiqing Fu, Maria Martinovsky, Eric Bouhassira, Mirit I. Aladjem

Journal:

Current Biology

Year:

2003

Language:

english

File:

PDF, 499 KB

english, 2003

13

Molecular Evolution of the Binding Site of the Acetylcholine Receptor

SARA FUCHS, DORA BARCHAN, SYLVIA KACHALSKY, DRORIT NEUMANN, MIRIT ALADJEM, ZVI VOGEL, MICHAEL OVADIA, ELAZAR KOCHVA

Journal:

Annals of the New York Academy of Sciences

Year:

1993

Language:

english

File:

PDF, 758 KB

english, 1993

14

Rif1 choreographs DNA replication timing

Aladjem, Mirit I

Journal:

The EMBO Journal

Year:

2012

Language:

english

File:

PDF, 238 KB

english, 2012

15

CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics

Luna, Augustin, Elloumi, Fathi, Varma, Sudhir, Wang, Yanghsin, Rajapakse, VinodhÂ N, Aladjem, Mirit I, Robert, Jacques, Sander, Chris, Pommier, Yves, Reinhold, William C

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 1.86 MB

2020

16

ES cells do not activate p53-dependent stress responses and undergo p53-independent apoptosis in response to DNA damage

Mirit I. Aladjem, Benjamin T. Spike, Luo Wei Rodewald, Thomas J. Hope, Martina Klemm, Rudolf Jaenisch, Geoffrey M. Wahl

Journal:

Current Biology

Year:

1998

Language:

english

File:

PDF, 167 KB

english, 1998

17

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method

Augustin Luna, Evrim I Karac, Margot Sunshine, Lucas Chang, Ruth Nussinov, Mirit I Aladjem, Kurt W Kohn

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 604 KB

english, 2011

18

Preferential Localization of Human Origins of DNA Replication at the 5′-Ends of Expressed Genes and at Evolutionarily Conserved DNA Sequences

Valenzuela, Manuel S., Chen, Yidong, Davis, Sean, Yang, Fan, Walker, Robert L., Bilke, Sven, Lueders, John, Martin, Melvenia M., Aladjem, Mirit I., Massion, Pierre P., Meltzer, Paul S., Lustig, Arthur

Journal:

Year:

2011

Language:

english

File:

PDF, 2.18 MB

english, 2011

19

Replication origins: determinants or consequences of nuclear organization?

Marks, Anna B, Smith, Owen K, Aladjem, Mirit I

Journal:

Current Opinion in Genetics & Development

Year:

2016

Language:

english

File:

PDF, 916 KB

english, 2016

20

LibSBGN: Electronic Processing of SBGN maps

Demir, Emek, Dogrusoz, Ugur, Le Novère, Nicolas, Matsuoka, Yukiko, Sorokin, Anatoly, Funahashi, Akira, Mi, Huaiyu, Kitano, Hiroaki, Aladjem, Mirit, van Iersel, Martijn, Blinov, Michael, Boyd, Sarah, V

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 1.40 MB

2011

21

The replication initiation determinant protein (RepID) modulates replication by recruiting CUL4 to chromatin

Jang, Sang-Min, Zhang, Ya, Utani, Koichi, Fu, Haiqing, Redon, Christophe E., Marks, Anna B., Smith, Owen K., Redmond, Catherine J., Baris, Adrian M., Tulchinsky, Danielle A., Aladjem, Mirit I.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 3.87 MB

english, 2018

22

The mammalian beta globin origin of DNA replication

Aladjem, Mirit, I.

Journal:

Frontiers in Bioscience

Year:

2004

Language:

english

File:

PDF, 438 KB

english, 2004

23

HPV integration hijacks and multimerizes a cellular enhancer to generate a viral-cellular super-enhancer that drives high viral oncogene expression

Warburton, Alix, Redmond, Catherine J., Dooley, Katharine E., Fu, Haiqing, Gillison, Maura L., Akagi, Keiko, Symer, David E., Aladjem, Mirit I., McBride, Alison A., Ott, Melanie

Journal:

Year:

2018

Language:

english

File:

PDF, 3.56 MB

english, 2018

24

The p53-induced RNA-binding protein ZMAT3 is a splicing regulator that inhibits the splicing of oncogenic CD44 variants in colorectal carcinoma

Muys, Bruna R., Anastasakis, Dimitrios G., Claypool, Duncan, Pongor, LÃ¶rinc, Li, Xiao Ling, Grammatikakis, Ioannis, Liu, Minxue, Wang, Xiantao, Prasanth, Kannanganattu V., Aladjem, Mirit I., Lal, Ash

Journal:

Genes & Development

Year:

2021

File:

PDF, 2.93 MB

2021

25

Preventing gene silencing with human replicators

Fu, Haiqing, Wang, Lixin, Lin, Chii-Mei, Singhania, Sumegha, Bouhassira, Eric E, Aladjem, Mirit I

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 224 KB

english, 2006

26

Carcinogen-induced activation of SV40 gene expression in a semi-permissive environment

Mirit I. Aladjem, Sara Law

Journal:

Year:

1992

Language:

english

File:

PDF, 1.34 MB

english, 1992

27

Circuit diagrams for biological networks

Kohn, Kurt W, Aladjem, Mirit I

Journal:

Molecular Systems Biology

Year:

2006

Language:

english

File:

PDF, 170 KB

english, 2006

28

The cyclin-dependent kinase inhibitor Dacapo promotes replication licensing during Drosophila endocycles

Hong, Amy, Narbonne-Reveau, Karine, Riesgo-Escovar, Juan, Fu, Haiqing, Aladjem, Mirit I, Lilly, Mary A

Journal:

The EMBO Journal

Year:

2007

Language:

english

File:

PDF, 565 KB

english, 2007

29

Order from clutter: selective interactions at mammalian replication origins

Aladjem, Mirit I., Redon, Christophe E.

Journal:

Nature Reviews Genetics

Year:

2016

Language:

english

File:

PDF, 659 KB

english, 2016

30

Human Papillomavirus Integration: Analysis by Molecular Combing and Fiber-FISH

Redmond, Catherine J., Fu, Haiqing, Aladjem, Mirit I., McBride, Alison A.

Journal:

Current Protocols in Microbiology

Year:

2018

Language:

english

File:

PDF, 2.03 MB

english, 2018

31

Interactions between replication and chromatin condensation in the human beta-globin locus

Haiqing Fu, Lixin Wang, Chii-Mei Lin, Eric E. Bouhassira, Mirit I. Aladjem

Journal:

Blood Cells, Molecules, and Diseases

Year:

2007

Language:

english

File:

PDF, 122 KB

english, 2007

32

Allele-specific analysis of DNA replication origins in mammalian cells

Bartholdy, Boris, Mukhopadhyay, Rituparna, Lajugie, Julien, Aladjem, Mirit I., Bouhassira, Eric E.

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

33

SIRT1 Deacetylates TopBP1 and Modulates Intra-S-Phase Checkpoint and DNA Replication Origin Firing

Wang, Rui-Hong, Lahusen, Tyler J., Chen, Qiang, Xu, Xiaoling, Jenkins, Lisa M. Miller, Leo, Elisabetta, Fu, Haiqing, Aladjem, Mirit, Pommier, Yves, Appella, Ettore, Deng, Chu-Xia

Journal:

International Journal of Biological Sciences

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

34

The mechanism of carcinogen-induced DNA amplification: in vivo and in vitro studies

Mirit I. Aladjem, Sara Lavi

Journal:

Mutation Research/Reviews in Genetic Toxicology

Year:

1992

Language:

english

File:

PDF, 448 KB

english, 1992

35

Allele-Specific Genome-wide Profiling in Human Primary Erythroblasts Reveal Replication Program Organization

Mukhopadhyay, Rituparna, Lajugie, Julien, Fourel, Nicolas, Selzer, Ari, Schizas, Michael, Bartholdy, Boris, Mar, Jessica, Lin, Chii Mei, Martin, Melvenia M., Ryan, Michael, Aladjem, Mirit I., Bouhassi

Journal:

Year:

2014

Language:

english

File:

PDF, 2.37 MB

english, 2014

36

EMBO Conference on Replication and Segregation of Chromosomes, Geilo, Norway, June 16–20 Replication and segregation of chromosomes in the three domains of life: EMBO conference reports common grounds: Meeting Report

Mirit Aladjem, Dhruba K. Chattoraj

Journal:

Year:

2009

Language:

english

File:

PDF, 141 KB

english, 2009

37

The DNA repair endonuclease Mus81 facilitates fast DNA replication in the absence of exogenous damage

Fu, Haiqing, Martin, Melvenia M., Regairaz, Marie, Huang, Liang, You, Yang, Lin, Chi-Mei, Ryan, Michael, Kim, RyangGuk, Shimura, Tsutomu, Pommier, Yves, Aladjem, Mirit I.

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015

38

Phosphorylated SIRT1 associates with replication origins to prevent excess replication initiation and preserve genomic stability

Utani, Koichi, Fu, Haiqing, Jang, Sang-Min, Marks, Anna B., Smith, Owen K., Zhang, Ya, Redon, Christophe E., Shimizu, Noriaki, Aladjem, Mirit I.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 7.29 MB

english, 2017

39

Replication in context: dynamic regulation of DNA replication patterns in metazoans

Aladjem, Mirit I.

Journal:

Nature Reviews Genetics

Year:

2007

Language:

english

File:

PDF, 486 KB

english, 2007

40

Epigenetic Regulation of DNA Repair Pathway Choice by MacroH2A1 Splice Variants Ensures Genome Stability

Sebastian, Robin, Hosogane, Eri K., Sun, Eric G., Tran, Andy D., Reinhold, William C., Burkett, Sandra, Sturgill, David M., Gudla, Prabhakar R., Pommier, Yves, Aladjem, Mirit I., Oberdoerffer, Philipp

Journal:

Year:

2020

File:

PDF, 2.82 MB

2020

41

The ligand binding domain of the nicotinic acetylcholine receptor: Immunological analysis

Sylvia G. Kachalsky, Mirit Aladjem, Dora Barchan, Sara Fuchs

Journal:

Year:

1993

Language:

english

File:

PDF, 679 KB

english, 1993

42

LibSBGN: Electronic Processing of SBGN maps

Demir, Emek, Dogrusoz, Ugur, Le Novère, Nicolas, Matsuoka, Yukiko, Sorokin, Anatoly, Funahashi, Akira, Mi, Huaiyu, Kitano, Hiroaki, Aladjem, Mirit, van Iersel, Martijn, Blinov, Michael, Boyd, Sarah, V

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 1.38 MB

english, 2010

43

The chromatin backdrop of DNA replication: Lessons from genetics and genome-scale analyses

Amy L. Conner, Mirit I. Aladjem

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2012

Language:

english

File:

PDF, 743 KB

english, 2012

44

Replication timing and nuclear structure

Fu, Haiqing, Baris, Adrian, Aladjem, Mirit I

Journal:

Current Opinion in Cell Biology

Year:

2018

Language:

english

File:

PDF, 886 KB

english, 2018

45

Human Papillomavirus Integration: Analysis by Molecular Combing and Fiber-FISH

Redmond, Catherine J., Fu, Haiqing, Aladjem, Mirit I., McBride, Alison A.

Journal:

Current Protocols in Microbiology

Year:

2018

File:

PDF, 2.03 MB

2018

46

ORCA/LRWD1 Regulates Homologous Recombination at ALT-Telomeres by Modulating Heterochromatin Organization

Hsu, Rosaline Y.C., Lin, Yo-Chuen, Redon, Christophe, Sun, Qinyu, Singh, Deepak K., Wang, Yating, Aggarwal, Vasudha, Mitra, Jaba, Matur, Abhijith, Moriarity, Branden, Ha, Taekjip, Aladjem, Mirit I., P

Journal:

Year:

2020

File:

PDF, 22.70 MB

2020

47

DNA-PK Is Involved in Repairing a Transient Surge of DNA Breaks Induced by Deceleration of DNA Replication

Tsutomu Shimura, Melvenia M. Martin, Michael J. Torres, Cory Gu, Janice M. Pluth, Maria A. DiBernardi, Jeffrey S. McDonald, Mirit I. Aladjem

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 2.08 MB

english, 2007

48

Bloom's Syndrome Helicase and Mus81 are Required to Induce Transient Double-strand DNA Breaks in Response to DNA Replication Stress

Tsutomu Shimura, Michael J. Torres, Melvenia M. Martin, V. Ashutosh Rao, Yves Pommier, Mari Katsura, Kiyoshi Miyagawa, Mirit I. Aladjem

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.86 MB

english, 2008

49

Corrigendum to “DNA-PK Is Involved in Repairing a Transient Surge of DNA Breaks Induced by Deceleration of DNA Replication” [J. Mol. Biol. 367 (2007) 665–680]

Tsutomu Shimura, Melvenia M. Martin, Michael J. Torres, Cory Gu, Janice M. Pluth, Maria A. DeBernardi, Jeffrey S. McDonald, Mirit I. Aladjem

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 67 KB

english, 2007

50

Organization of Synthetic Alphoid DNA Array in Human Artificial Chromosome (HAC) with a Conditional Centromere

Kouprina, Natalay, Samoshkin, Alexander, Erliandri, Indri, Nakano, Megumi, Lee, Hee-Sheung, Fu, Haiging, Iida, Yuichi, Aladjem, Mirit, Oshimura, Mitsuo, Masumoto, Hiroshi, Earnshaw, William C., Larion

Journal:

ACS Synthetic Biology

Year:

2012

Language:

english

File:

PDF, 4.05 MB

english, 2012

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